PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0229s0041.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 741aa    MW: 80464.2 Da    PI: 6.1303
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0229s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.33.9e-20599696296
                          EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +kvl++sdv+++gr+vlpkk ae+h  ++  + ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fvk+ngL+egDf+v++  +
  Kalax.0229s0041.1.p 599 QKVLKQSDVGSLGRIVLPKKEAETHlpQLTARDGINIAMEDiGTSNVWNMRYRFwpNNKSRMYLLE-NTGDFVKSNGLQEGDFIVIY--S 685
                          79*************************999999********7778*******99777777777777.********************..6 PP

                          S.SEE..EEEE CS
                   B3  87 r.sefelvvkv 96 
                          + ++++++++ 
  Kalax.0229s0041.1.p 686 DiKCGKYMIRG 696
                          77999888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-27592704IPR015300DNA-binding pseudobarrel domain
CDDcd100153.17E-34596697No hitNo description
SuperFamilySSF1019366.87E-22597691IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.348598700IPR003340B3 DNA binding domain
SMARTSM010193.6E-19598700IPR003340B3 DNA binding domain
PfamPF023622.5E-16599695IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MVTKAGVGLE EGGRRSDNLM HAAPPDAAEV DGDDVMVDLS CFGGYSSAEA AMEEADHQDL  60
MENAAAIFCD DLIPPLPDFQ CMSSSSSSSS STAVKPVAYR STASSSVSSS SSSWAVLRSD  120
GEEQHNTGGE CINNHQPQQV ALSSTASMEM YPQSGQSNRL DEGDDIGCMD VMETLSYMDL  180
LDENGQVWDY SDSPVFDCNR EEAFQCNREA ENQPQPPHAA AATASEFVHE KGDNSEGLDK  240
SEDLAMVFFE WLKSNKESVS AEDLRSIKLK KSTIETAAKR LGNGKEGMKR LLQLILEWVQ  300
QHQLQRKRRR EEEAAAAATM VGGQAGFPNQ PYPVQYPTQP FQSQDADFIN SNLQPDPVGF  360
TGAVNPPPWS VGSSAGFDHM VAVGVPAAGA GYVGGGDRFG HLSNMVDQPA ATPWPPAALP  420
FCMNYGDNSR SVQNLSPVAL QQAYPFGAGA FNQYPYQYYP AVGNGSTLNG PASDDGLART  480
GSSATKEARK KRMARQRRFS SHHRHHYHHH SSSSNSHGLH HVNNGQSNQM NMAVGTASPH  540
GRVNMEENYA NIGQPPGGGN WACWGNAAAP PLPLVPNVAK SFQVNEGLKA EKNLRFLLQK  600
VLKQSDVGSL GRIVLPKKEA ETHLPQLTAR DGINIAMEDI GTSNVWNMRY RFWPNNKSRM  660
YLLENTGDFV KSNGLQEGDF IVIYSDIKCG KYMIRGVKVR QQGPRPDNRR SGKALKKNPS  720
STSNGASPSP NNTPHKETYL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305309RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024550.11e-156PREDICTED: B3 domain-containing transcription factor ABI3
TrEMBLR4TV461e-159R4TV46_POPTO; ABI3
STRINGPOPTR_0002s25330.11e-150(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-67B3 family protein